AlienTrimmer: A tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads http://www.sciencedirect.com/science/article/pii/S0888754313001481
NEMO: a tool for analyzing gene and chromosome territory distributions from 3D-FISH experiments http://bioinformatics.oxfordjournals.org/content/26/5/696.full #NEMO #Chromatin #Territory
ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes http://nar.oxfordjournals.org/content/32/suppl_2/W280.short #Browser #Visualization #Genome #Synt