Results for "Annotated"
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RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly version...3002 days ago
- ...le formats including Bam, BigWig, BigBed, and USeq. The Bio::ToolBox package includes scripts for setting up databases of annotation, collecting annotated features, collecting genomic...
2990 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human visual...2923 days ago
- ...tazoans, fungi, eukaryotes, and bacteria. These conserved orthologs are ideal candidates for large-scale phylogenomics studies, and the annotated BUSCO gene models built durin...
2909 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visu...dinburgh Goal: To create blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots...minants, symbionts and parasites using taxon-annotated GC-coverage plots. Sujai...
2875 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and...
2801 days ago
- ...ct and eliminate frameshift mutations and premature stop codons to compute the substitution rates (Ka, Ks and Ka/Ks) between a well-annotated genome and a non-annotated genome or even a poorly assem...
2798 days ago
Method in Comparative genomics !!
...ivity and specificity. We used this test to revisit the genome of S. cerevisiae, reducing the overall gene count by 500 genes (10% of previously annotated genes) and refining the gene...2726 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales wel...2610 days ago
- With PhenoGram researchers can create chomosomal ideograms annotated with lines in color at specific base-pair locations, or colored base-pair to base-pair regions, with or without oth...
2608 days ago
