Results for "Annotated"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...and novel structural features of study species by comparing to a well annotated reference sequence, thus enab...n them. GSV also allows users to upload annotation files to visualize annotated regions in addition to synten...2604 days ago
List of gene ontology software and tools
...logy (GO) disclaimer icon associated with those genes. It provides several tools to view/access the GO term hierarchy, full listing of GO terms annotated with the genes associated wit...3703 days ago
- +6 more Blogs
Bookmarks
- RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly version...
3003 days ago
- ...le formats including Bam, BigWig, BigBed, and USeq. The Bio::ToolBox package includes scripts for setting up databases of annotation, collecting annotated features, collecting genomic...
2991 days ago
- +26 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...for any SpeciesThe est2assembly platform is the only platform for standardising transcriptome projects: go from raw trace files to an annotated GBrowse interface driven by t...2679 days ago
Top-level pages
- ...ly valuable through their annotation. Several layers of analysis with bioinformatics tools are necessary to arrive from a raw DNA sequence at an annotated protein sequences: establi...
3941 days ago
Next generation sequencing in R or bioconductor environment
...a Rsamtools) and associating them with genomic feature ranges, such as exons or genes. This way one can quantify the number of reads aligning to annotated genomic regions. The package...3618 days ago
- +6 more Top-level pages
News
Scientists map 17,294 proteins produced in human body
...e antibody-based Human Protein Atlas programme http://www.humanproteomemap.org/ -Proteogenomic analysis by identifying translated proteins from annotated pseudogenes, non-coding RNAs...3623 days ago
- What is new? Expansion of Protists and Fungi with hundreds of annotated genomes Variation data for bread wheat, rice, Aedes aegypti, and Ixodes scapularis Whole genome alignments...
3239 days ago
Opportunity posts
Protein function annotation and machine learning - UPMC - Paris, France
...obabilistic models coding for about 10^7 evolutionary protein pathways. Such models will be used to search for specific domains in genomes to be annotated. Our previous methodology nee...3558 days ago
Bio-Scripts
- ...rted in three different files. NeuralNetInference (EXPERIMENTAL Tool) Apply 1d Convolutional Neural Net to filter annotated variants ValidateBasicSo...
2069 days ago
- jit@jit-HP-Pro-3335-MT:~/Downloads/annotated$ sudo apt install vcftools [sudo] password for jit: Reading package lists... Done Building dependency tree Reading state inform...
1519 days ago
- +1 more Bio-Scripts
Comments
- ...lly, provides three types of quality control: read counts (such as duplicate reads, mapped reads and mapped unique reads, rRNA reads, transcript-annotated reads, strand specificity), c...
2131 days ago
- Thanks for GeneSCF, it is really useful. I am dealing with new genome, with priliminary annotations. The annotated ids are not universally accepted. Once I tried to convert...
2628 days ago
