GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
...f charge. If you use this program in a publication, please cite the following reference:Chong Chu, Xin Li, and Yufeng Wu. "GAPPadder: A Sensitive Approach for Closing Gaps on Draft Gen...2197 days ago
LAMSA: fast split read alignment with long approximate matches
...ng Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ab...implementing a sparse dynamic programming (SDP)-based split alignment approach to handle the large or non-co...2196 days ago
2196 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2103 days ago
Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that each allele of t...2079 days ago
GenomeThreader: Gene Prediction Software
...omeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and...2055 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to...2039 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
...leaves in a bottom–up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygot...2039 days ago
NovoGraph: building whole genome graphs from long-read-based de novo assemblies
NovoGraph: building whole genome graphs from long-read-based de novo assemblies An algorithmically novel approach to construct a genome graph representation of long-read-based de...2012 days ago
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