2751 days ago
2715 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...nd tutorials for the kallisto bustools workflow are available at http://pachterlab.github.io/kallistobustools. https://www.nature.com/articles/s41587-021-00870-21138 days ago
2632 days ago
2585 days ago
Pollux: platform independent error correction of single and mixed genomes
...rthermore, we show that the quality of assemblies improves when reads are corrected by our software. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-014-0435-62555 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...ordering and the detection of genes from mobile elements (plasmids and genomic islands). Complete paper at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5321748/2551 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
...nd effectively. SIMBA also is open source tool, i.e., can be freely downloaded, shared and modified. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1344-72551 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
...ence genomes and predicts scores and ranking for contigs which have no related reference genome yet. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0644-7 &n...2550 days ago
2499 days ago