Useful Publications and Websites for Deep Sequencing Data Analysis
...compressed data structures. Simpson & Durbin, Genome Research 22:549-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which assembled a human genome in less than 6...3783 days ago
2872 days ago
Genome Assembly Tools and Software - PART1 !!
...MaxBin 2.2 – Binning Assembled Metagenomic Sequences MaxBin is software for binning assembled metagenomic sequences based o...ect these errors at their mis-assembled positions to improve the asse...the Gaps in Scaffolds with Preassembled Contigs GMcloser fills and...2689 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...bly-free phylogenomics AAF Phylogeny reconstruction directly from unassembled raw sequence data from whole...) https://github.com/pdtrang/GSM Mash Species identification using assembled or unassembled Illumina, PacB...2374 days ago
Some useful Bioinformatics links
...db-mml.sjtu.edu.cn/ICEberg/index.php Satsuma - Evolution and Genomics http://evomics.org/learning/genomics/satsuma/ A complete bacterial genome assembled de novo using only nanopore s...2245 days ago
Bioinformatics tools for genome assembly !
...last update. Additionally, the performance of these tools can vary depending on the characteristics of the sequencing data and the genome being assembled. When selecting an assembly t...289 days ago