Results for "Assemblies"
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...thetic errors in both single and metagenomic assemblies, including single-base errors...eletions, genome rearrangements and chimeric assemblies presented in metagenomes. At...y accuracy, which can be used to identify misassemblies or to optimize the assembly p...2931 days ago
- ...on of genome coordinates (or annotation files) between different assemblies (such as Human hg18...TF, VCF. CrossMap is designed to liftover genome coordinates between assemblies. It’s not a p...
2799 days ago
- ...enome sequencing. However, de novo assemblies consist in many pieces of con...Confirming and improving the quality of such assemblies is critical for subsequent an...ion and quality assessment of de novo genome assemblies. In brief, our scripts creat...
2811 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...neration sequencing. The main results of GAGE have now been published in the journal Genome Research: GAGE: A critical evaluation of genome assemblies and assembly algorithms. htt...2797 days ago
- ...a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of pro...ere potentially mis-assembled, or to compare the quality of different assemblies. For comparing multiple assem...
2782 days ago
- LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by O...echnologies Ltd. It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg....
2739 days ago
- ...ions using a pre-specified assembler (Velvet or SPAdes in this version) and using a given kmer size. 3. Merging all the assemblies of the partition. 4. Combining all the assemblies of the partition (using velve...
2714 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2713 days ago
CISA: Contig Integrator for Sequence Assembly
...However, few efforts have been pursued to take advantage of multiple assemblies to yield an assembly of high...rial genomes. A tool, named CISA, has been developed to integrate the assemblies into a hybrid set of contigs,...2698 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...and annotation can be obtained with ease. It performed better than de novo assemblers and contig integration software. Produces more contiguous assemblies, higher N50 values and lower...2698 days ago
