Results for "Assembly"
Bookmarks
CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36)&nb...2792 days ago
- ...applications. Training Resources: Bioinformatics Workshop (Webinars) Bioinformatics Training Slides Specialized Applications: De Novo Assembly Transcriptome analysis Base...
2620 days ago
- ...bus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the o...
2812 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1218 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as...and returns scaffolded homozygous genome assembly, that should be less fra...bsp;close the gaps resulting from genome assembly or scaffolding more deta...
2796 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from pai...the intermediate contigs/scaffolds assembled in a genome assembly project, in a process known a...2788 days ago
- ...y longer N50. However, the major weakness of fermi is the high misassembly rate. Although fermi pro...use the run-fermi.pl script. It generates a Makefile. The actual assembly is done by invoking make. Pre...
2788 days ago
- ...scientists had to raise funds together by writing a joint white-paper and petitioning to various government agencies. The tasks of sequencing and assembly were handled by dedicated seq...
2792 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...luation of the very latest large-scale genome assembly algorithms. We have organized...t to produce a realistic assessment of genome assembly software in a rapidly changin...critical evaluation of genome assemblies and assembly algorithms. http://genome.cs...2790 days ago
- ...roperties that should hold true for a correct assembly (e.g., mate-pairs are aligned...t the correct distance from each other in the assembly, the depth of coverage is fai...erall estimate of the likelihood a particular assembly is correct. Home Page:...
2775 days ago
