CISA: Contig Integrator for Sequence Assembly
...assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse species. Optimizi...rformed in order to generate the most optimal assembly. However, few efforts have be...2691 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...nomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assembly and annotation can be obtaine...2691 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...spite this, some old problems have become even more difficult, de novo assembly being on top of this list. De...In this paper, we propose a novel method that aims to improve de novo assembly in the presence of a closely...2687 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al.,...2687 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...ulti-FASTA format to produce an improved contig set based on OLC based assembly. All overlap parameters (Mini...in $PATH, or added to $binpath in the tool: Newbler (specifically runAssembly)Minimus2 (part of AMOS, also...2687 days ago
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