Results for "Aware"
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Statistical for biological research
...only after an experiment is completed, when it may be too late. This collection highlights important statistical issues that biologists should be aware of and provides practical adv...2755 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2639 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
...ance. While it is prevalent in prokaryotes, HGT is less frequent in eukaryotes and particularly in Metazoa. Here, we propose Alienness, a taxonomy-aware web application available at&...2261 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
...ut scaffolding to contigs in the reference scaffolding in the sense of the number of correct links. https://github.com/mandricigor/repeat-aware2252 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...ence genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approxim...2217 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, t...2100 days ago
LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-ca...1553 days ago
flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
FlexiDot is a cross-platform dotplot suite generating high quality self, pairwise and all-against-all visualizations. To improve dotplot suitability for comparison of...1487 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
SVEngine (Structural Variants Engine) SVEngine is a multi-purpose and self-contained simulator for whole genome scale spike-in of thousands of SV events of various...1416 days ago
