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Results for "BAM"

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• • Shruti Paniwala@shruti

  

  Coverage R Plot http://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/ #R #Plot #Genome #Image #NGS #BAM

  2743 days ago

• • Jit@jit.aber

  

  Understanding and manipulating SAM/BAM alignment files http://homer.salk.edu/homer/basicTutorial/samfiles.html #SAM #BAM #File #Explain

  2621 days ago

• • Jit@jit.aber

  

  SAM and BAM handling with Perl http://search.cpan.org/~lds/Bio-SamTools/lib/Bio/DB/Sam.pm # Perl #SAM #BAM

  2615 days ago

• • Jit@jit.aber

  

  Split the bam file by chromosome. $ bamtools split -in file.bam -reference #Split #Bam #Bamtools

  2617 days ago

• • Jit@jit.aber

  

  Convert a SAM file to tab-delimited alignment coordinates https://gist.github.com/sjackman/7016520 #SAM #BAM #Convert #Tab

  2614 days ago

• • Jit@jit.aber

  

  samtools view -f 256 Input.bam | awk '$6 ~/S/ && $7 == "=" {print $0}' > Secondary_clipped.sam

  2288 days ago

• • Jit@jit.aber

  

  Bioinformatics tutorial https://jasonjwilliamsny.github.io/wrangling-genomics/01-automating_a_workflow.html #Workflow #Tutorial #BAM #SAM #SNP

  2202 days ago

• • Jit@jit.aber

  

  #Zero coverage regions ~/Tools/bedtools2/bin/bedtools genomecov -ibam PvsH_aln_sorted.bam -bga | awk '$4==0' > ZERO_coverage_regions.txt

  2137 days ago

• • Neelam Jha@neelam

  

  Generate consensus from BAM file samtools mpileup -uf chr5B_leaf_rust.fasta M27454_5B_reads_sorted.bam | bcftools call -c | vcfutils.pl vcf2fq #BAM #Consensus

  2026 days ago

• • Neelam Jha@neelam

  

  BAM2BED conversion bamToBed -i overall_exp_genome_rep1.bam > alignment.bed #Bed #bam #bamToBed #convert

  2020 days ago

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