Instructions for Creating Your Own R Package
The following is a step-by-step guide to creating your own R package. Even beyond this course, youmay find this useful for st...ions you create for your own research or for editing existingR packages to suit your needs. This gu...1554 days ago
Nanopolis: polish a genome assembly
Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect ba...2127 days ago
LSC :a long read error correction tool
Getting Started These simple steps will help you integrate LSC into your transcriptomics...bsp;LSC_requirements for running LSC. Download and set-up the LSC package. Follow the tutorial&nb...2120 days ago
2114 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureC...2113 days ago
mmgenome: Tools for extracting individual genomes from metagneomes
The mmgenome toolbox enables reproducible extraction of individ...ble through the Rmarkdown format. The mmgenome R package also facilitates effortless i...een as "yet another binning method", but rather a package to integrate different binnin...2112 days ago
CBS Comparative Microbial Genomics group - BioTools download page
he CMG-biotools system presents a stand-alone interface for comparative microbial genomics. The package is a customized operating sys...er systems if so desired. We here demonstrate the package by comparing and analyzing th...2099 days ago
2074 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small...to accomodate larger genomes. The impetus for this software package was to be able to accurately...2072 days ago
2049 days ago