Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for single molecule sequencing reads, such as those produced b...sets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipelin...1876 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for single molecule sequencing reads, such as those produced b...sets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipelin...1782 days ago
The Extensive de novo TE Annotator (EDTA)
The EDTA package was designed to filter out false discoveries in raw TE candidates and generate a high-quality non-redundant TE library for whole-genome TE annotations. Sele...1749 days ago
Retrieving Taxonomic Information with R
This vignette will introduce users to the retrieval of taxonomic information with myT...xonomy() function implemented in myTAI relies on the powerful package taxize. Nevertheless, ta...1728 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
chromoMap provides interactive, configurable and elegant graphics visualization of ch...Markdown or in R Shiny applications. Some of the prominent features of the package are: visualizing polyploid...1718 days ago
1708 days ago
RepeatModeler2: automated genomic discovery of transposable element families
RepeatModeler2 represents a valuable addition to the genome annotation toolkit that will e...ome sequences. RepeatModeler2 is available as source code or a containerized package under an open license (https:...1632 days ago
1611 days ago
heatmaply: popular graphical method for visualizing high-dimensional data
This work is based on ggplot2 and plotly.js engine. It produces...vides an interface based around the plotly R package. This interface can be used b...lmost identical features. Documentation for this package is also available as a p...1592 days ago
modelStudio: a package automates the explanation of machine learning predictive models
The modelStudio package automates the explanation of machine learning predictive models. This package generates advanced interactiv...1581 days ago