2712 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ee-standing multi-application package-- SNP/Indel analysis, CNV pre...ore Reads, written in Python; Package comes with 3 programs, margin...caller; unlike other software packages, treats effects fully probab...) into R”; Command line package program; Published August 201...2907 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of sho...pting a very efficient strategy. The package integrates the Oases pipeline...DETONATE consists of two component packages, RSEM-EVAL and REF-EVAL. Bot...Reads, especially for RAD Rainbow package consists of several programs...2684 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, librari...e fletcher/MultiMarkdown-CMS - Package to assist with publishing a w...ger for Fluentd (Perl) dann/p5-cpan-packager - CPAN::Packager is a t...ocol atom/language-perl - Perl package for Atom ewels/clusterflow&n...2487 days ago
2487 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignmen...d d2 S under different Markov chain models (using k-words) R package http://www-rcf.usc.edu/~fsun...2369 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web p...le with the CPAN, but the intention is to provide good working defaults in a package that's easy to start with. Mo...2319 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a g...2312 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads |...erage-plot-using-bedtools-and-r/ Eval: A software package for analysis of genome annota...l-documentation.pdf OmicCircos: A Simple-to-Use R Package for the Circular Visualizatio...2239 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are writt...ps://sourceforge.net/project/showfiles.php?group_id=100316&package_id=108243&release_id=340318 confirm that the package installed correctly look for...2216 days ago