Results for "BBMap/BBTools package"
Bio-Scripts
Setting up falconUnzip conda environments for genome assembly !
...lving environment: done ## Package Plan ## environment loca...b-assembly The following packages will be downloaded: p...280.6 MB The following NEW packages will be INSTALLED: as...Downloading and Extracting Packages python-2.7.15 | 13.6...1990 days ago
- $ sudo apt install npm Reading package lists... Done Building depen...verse amd64 node-validate-npm-package-license all 3.0.1-1 [3,488 B]...universe amd64 node-normalize-package-data all 2.3.5-2 [10.6 kB]...lecting previously unselected package node-qs. Preparing to unpack...
1554 days ago
Bash command to install Miniconda !
(base) [wsu29@bladeamd-2 tmp]$ wget https://repo.a...3 Unpacking payload ... Collecting package metadata (current_repodata.js...Solving environment: done ## Package Plan ## environment loca...nux-64::conda-4.7.12-py37_0 conda-package-han~ pkgs/main/linux-64::cond...1556 days ago
Bash command to install bwa, samtools, picard !
(base) [wsu29@bladeamd-2 tmp]$ conda install bwa Collecting package metadata (repodata.json): don...Downloading and Extracting Packages certifi-2019.11.28 | 156...8.0 MB The following NEW packages will be INSTALLED: bzip...302.7 MB The following NEW packages will be INSTALLED: _r-m...1556 days ago
Bash command to install GATK, Bedtools and SnpEff !
(my_GATK) [wsu29@bladeamd-2 tmp]$ conda install gatk Collecting package metadata (repodata.json): don...Downloading and Extracting Packages pip-20.0.2 | 1.9...install bedtools Collecting package metadata (repodata.json): don...1556 days ago
Install Nucmer on Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sud...[sudo] password for jit: Reading package lists... Done Building depen...on... Done The following additional packages will be installed: gawk.../s) Selecting previously unselected package gawk. (Reading database ......1551 days ago
Install python pip and numpy on Linux / Ubuntu
...one The following additional packages will be installed: libexp...-xdg python2.7-dev Suggested packages: python-crypto-doc python...lecting previously unselected package libexpat1-dev:amd64. (Readin...lecting previously unselected package python-all. Preparing to unp...1551 days ago
Install miniasm in Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install miniasm Reading package lists... Done Building depen...on... Done The following additional packages will be installed: minima.../s) Selecting previously unselected package miniasm. (Reading database ....1551 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...1 MB * installing *source* package ‘glue’ ... ** package ‘glue’...ttes ** testing if installed package can be loaded * DONE (magrit...** R ** inst ** preparing package for lazy loading ** help **...** R ** inst ** preparing package for lazy loading ** help **...1551 days ago
- ...lving environment: done ## Package Plan ## environment loca...- conda The following packages will be downloaded: p...7.5 MB The following packages will be UPDATED: asn1cr....34.2-py37_0 The following packages will be DOWNGRADED: pyc...
1547 days ago
