Results for "BED files"
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v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome al...allation and version management. The installation does not create or modify any files outside the progressiveCactus...2665 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality...
2659 days ago
- BioDownloader is a program for downloading and/or updating files from ftp/http servers. The pro...deal with bioinformatics data files and servers: optimized to...retrieval of only the required files (file masks, ls-lR parsing, r...It can post-process downloaded files, including archive extraction...
2625 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data....eatures, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii...2645 days ago
- Simple ideogram plotting and annotation in R. Basic usage: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscri...annotations.bed Options --ideobed, i A bed f...
2638 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances...e, analyze, annotate and visualize MAF files in an efficient manner either...visualization and summarization of MAF files from large-scale cohort based...
2635 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circu...n raw, unassembled sequence data. BRIG also accepts SAM-formatted read-mapping files enabling genomic regions pres...
2634 days ago
- ...the genome. For example, bedtools allows one tointers...nomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each indiv...p;intersect two interval files), quite sophisticated analyse...
2627 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if no sam record was found fo...2623 days ago
- CLgenomics is a standalone desktop software specifically designed for b...If multiple genomes are being considered and compared, multiple CLG files are needed. ChunLab offers >40,000 CLG files of publicly available Bacteri...
2620 days ago
