Genome Assembly Tools and Software - PART1 !!
...algorithm and benchmarks are described in the Genome Biology ma...nd-line Perl script and additional files van be downloaded below. Th...DNA sequence assemblies using CAF files, a comprehensive representati...ads, optionally with PCR primers embedded in the sequence, and reconst...2685 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a...ry to open the file. Command Line Args ARGV Filehandle iterates over files from command line (see also&n...2643 days ago
Awesome perl frameworks, libraries and software - PART 1
...- Perl module to create Excel XLSX files. plainblack/webgui -...erl routine to sync folder of text files with your notes on Simplenote...just another Parrot language by embedding the Perl 5 interpreter. je....7 briandfoy/Learning-Perl-Sample-Files - Extra files for use wi...2488 days ago
2488 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification fro...ion transcript prediction using gene k-mers profiles of the RNA-seq paired-end rea...Software (C) https://sourceforge.net/projects/ksnp/files/ NGS-MC Phylogeny of specie...2370 days ago
2350 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally,...r now, just think of it as a way to get ahold of a particular set of files. In this case, we’ve placed the files in /root/ngs-scripts/, and yo...2336 days ago
Bioinformatics Web Application Development with Perl
...nterface to huge relational databases and flat files alike through its DBD exten...ng one or more .cgi or .pl files in a special directory and ho...ut still viable mod_perl Apache httpd module embeds Perl into the web server. This...2321 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple...erence, or splitting the reads into multiple output files, one per reference. BBSplit c..._%.fq outu=clean.fq int=tThis will produce 3 output files:out_ecoli.fq (ecoli read...2313 days ago
2304 days ago