Results for "BLAST Parser"
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CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individua...by existing tools. This tool is implemented in Python and requires MUMmer and BLAST+...2692 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large...rence sequence and other sequences as concentric rings. BRIG will perform all BLAST...
2629 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST...
2628 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGcha...counts for the distance between neighboring genes on each DNA molecule and the BLAST...2628 days ago
- SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for use locally or over the web. More at http://sequenceserver.com.
2607 days ago
- This website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms.../denovo.html http://sfg.stanford.edu/sequencing.html http://sfg.stanford.edu/BLAST....
2584 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitabl...ding contigs and assemblies, providing a speedup of BLAST...
2559 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar geno...rs from tedious manual annotation of these sequences. The program utilizes tBLASTn and BLASTn...2527 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to...he Basic Local Alignment Search Tool (BLAST) has revolutionized the field...echniques, the utility of traditional BLAST implementations is limited. C...ebchem.ncbr.muni.cz/Platform/App/CrocoBLAST2470 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST...2345 days ago
