Results for "BLAST databases"
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Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Ser...bam as we as the GENCODE annotation v29 from ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release...1152 days ago
A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest and also how to get new insight...you will see how to look efficiently for a particular protein sequence, how to blast it...3650 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
In recent years, computational biology and medical informatics have seen significant...networks. Computational Proteomics: Filtering and indexing sequence databases, Peptide quantification and i...3512 days ago
- MAKER is a portable and easily configurable genome annotation pipeline.Its purpose i...c genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, al...
3023 days ago
- This is a collection of libraries and high-quality end-user scripts for bioinformati...ig, BigBed, and USeq. The Bio::ToolBox package includes scripts for setting up databases of annotation, collecting ann...
3011 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it...f the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LA...2938 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to m...classification accuracy comparable to the fastest BLAST program. In its fastest mode,...illion reads per minute, 909 times faster than Megablast and...2882 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is...or the microbial subset of the non-redundant protein database nr used by NCBI BLAST, op...
2882 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >O...2874 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for interactively analyzing micr...hundreds of samples containing hundreds of millions of sequencing reads. Blast-lik...
2854 days ago
