Results for "Bash Scripting"
Users
Skills: Bash Scripting1630 days ago
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependenci...king. Following are the error message when CPAN module is not installed.# cpan-bash: cpa...3960 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions am...uch file or directoryThis was fixed with the following apt-get command (in the bash shel...
3950 days ago
- +5 more Blogs
Bookmarks
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completel...ormaticians, so a gap exists between the user-friendly software needed and the scripting/programming infrastructure of...3797 days ago
- This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly to...eference and source of knowledge on shell scripting techniques. The exercises and...premise that the only way to really learn scripting is to write scripts. This bo...
3009 days ago
- +14 more Bookmarks
Pages
Keep Your Important SSH Session Running when You Disconnect from Server !!!
As a Bioinformatician/ Computational biologist we swim in the ocean of genomic/proteomics data, and play with the...are, tools such as tmux ( http://tmux.sourceforge.net/, nohup (http://ss64.com/bash/nohu...3714 days ago
Linux Sort Commands for Bioinformatics
Almost all the scripting languages such as Perl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come to space eff...3637 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA...ogical programming languages with their packages/libraries, and assist in your scripting work. Navigate the sub-secti...
3958 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...tory analysis, from Lex Nederbragt Tutorials for bash shell scripting A tutorial at linuxconfig.org A Getting Started With Bash tutorial at hypexr.org Mendel Cooper's Advanced Bash Shell-Scripting Guide Tutorials for sed, t...3790 days ago
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Wire posts
Opportunity posts
- van Noort Group is looking for PhD fellows We currently access an unprecedented...analysis methods, machine learning, protein interaction databases, perl/python scripting or BioconductoR are preferred...
3959 days ago
Researcher in computer science/biology
Researcher in Computer Science at the Computational Biology Unit - temporary employ...is of data from high-throughput molecular experiment. Basic programming or scripting skills are required. Experien...3957 days ago
- +29 more Opportunity posts
Video
PHP Tutorial 1 - Introduction (PHP For Beginners)
In this tutorial we go over a short presentation on what PHP is, what is required t...ring further down the line. This video will hopefully introduce you to the PHP scripting language and get you interest...3659 days ago
Bio-Scripts
BASH script for SelfBLAST a genome
#!/bin/bash #self BLAST a genome -- Expecting you have blast and samtools installed in your system #Author: Jitendra Narayan #USAGE: ./selfBlast.sh extract #USAGE...2662 days ago
Download the genome from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory mkdir genome cd genome # Look for genome assembly summary and extract the URL...2542 days ago
- +55 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Enginee...u tell next generation bioinformaticians? Bioinformatics is not all about scripting and researchers who study in...2372 days ago
Groups
Perl(Practical Extraction and Reporting Language) is a family of high-level, genera... Perl was originally developed by Larry Wall in 1987 as a general-purpose Unix scripting language to make report proce...3963 days ago
Python is a programming language that lets you work more quickly and integrate your...ic typing, together with its interpreted nature, make it an ideal language for scripting and rapid application develop...3956 days ago
