BOL: Results for "Bash Scripting"

Results for "Bash Scripting"

- Jit@jit.aber
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependenci...king. Following are the error message when CPAN module is not installed.# cpan-bash: cpa...
3946 days ago
- Jit@jit.aber
Installing Perl GD Module
In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions am...uch file or directoryThis was fixed with the following apt-get command (in the bash shel...
3936 days ago
+5 more Blogs

- Poonam Mahapatra@poonam
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completel...ormaticians, so a gap exists between the user-friendly software needed and the scripting/programming infrastructure of...
3783 days ago
- Jit@jit.aber
Advanced Bash-Scripting Guide
This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly to...eference and source of knowledge on shell scripting techniques. The exercises and...premise that the only way to really learn scripting is to write scripts. This bo...
2995 days ago
+14 more Bookmarks

- Jitendra Narayan@admin
Keep Your Important SSH Session Running when You Disconnect from Server !!!
As a Bioinformatician/ Computational biologist we swim in the ocean of genomic/proteomics data, and play with the...are, tools such as tmux ( http://tmux.sourceforge.net/, nohup (http://ss64.com/bash/nohu...
3700 days ago
- Rahul Nayak@rahul
Linux Sort Commands for Bioinformatics
Almost all the scripting languages such as Perl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come to space eff...
3623 days ago
+5 more Pages

- Jitendra Narayan@admin
BioProgramming
The completion of the first human genome drafts was just a start of the modern DNA...ogical programming languages with their packages/libraries, and assist in your scripting work. Navigate the sub-secti...
3944 days ago
- Rahul Nayak@rahul
Useful Publications and Websites for Deep Sequencing Data Analysis
...tory analysis, from Lex Nederbragt Tutorials for bash shell scripting A tutorial at linuxconfig.org A Getting Started With Bash tutorial at hypexr.org Mendel Cooper's Advanced Bash Shell-Scripting Guide Tutorials for sed, t...
3776 days ago
+6 more Top-level pages

- Jit@jit.aber
The syntax to remove last character from line or word is as follows: x="foo bar" echo "${x%?}" #Remove #Last #Bash #Linux
3548 days ago
- Jit@jit.aber
Join the result of ls -1 into one line and delimit it with comma : newStr=$(ls -m *.txt) or mystring=$(printf "%s," *) #Bash #Comma #String #List #ls
3548 days ago
+16 more Wire posts

- Jitendra Narayan@admin
PhD Positions
van Noort Group is looking for PhD fellows We currently access an unprecedented...analysis methods, machine learning, protein interaction databases, perl/python scripting or BioconductoR are preferred...
3945 days ago
- Jit@jit.aber
Researcher in computer science/biology
Researcher in Computer Science at the Computational Biology Unit - temporary employ...is of data from high-throughput molecular experiment. Basic programming or scripting skills are required. Experien...
3943 days ago
+29 more Opportunity posts

- Ram Yash Pal@ramyash
PHP Tutorial 1 - Introduction (PHP For Beginners)
In this tutorial we go over a short presentation on what PHP is, what is required t...ring further down the line. This video will hopefully introduce you to the PHP scripting language and get you interest...
3645 days ago

- Jit@jit.aber
BASH script for SelfBLAST a genome
#!/bin/bash #self BLAST a genome -- Expecting you have blast and samtools installed in your system #Author: Jitendra Narayan #USAGE: ./selfBlast.sh extract #USAGE...
2648 days ago
- Jit@jit.aber
Download the genome from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory mkdir genome cd genome # Look for genome assembly summary and extract the URL...
2528 days ago
+55 more Bio-Scripts

- Jitendra Narayan@admin
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Enginee...u tell next generation bioinformaticians? Bioinformatics is not all about scripting and researchers who study in...
2358 days ago

Perl *PIPERs
Perl(Practical Extraction and Reporting Language) is a family of high-level, genera... Perl was originally developed by Larry Wall in 1987 as a general-purpose Unix scripting language to make report proce...
3949 days ago
Python Everywhere
Python is a programming language that lets you work more quickly and integrate your...ic typing, together with its interpreted nature, make it an ideal language for scripting and rapid application develop...
3942 days ago