MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity) is an automatic system for determining the similarity of programs. To...yze code written in the following languages: C, C++, Java, C#, Python, Visual Basic,...2352 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but s...2496 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different pieces of DNA. The Basic L...2489 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics....2477 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence...ryotic genomes with performance guarantees. Genome Biology, May 2016, doi: 10.1186/s1305...put paired-end sequences. Journal of Computational Biology, Sept. 2011, doi:10.1089/cmb....2364 days ago
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phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly...2362 days ago
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Biological file format tutorial
This section explains some of the commonly used file formats in bioinformatics. The information provided here is basic a...2343 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but s...2258 days ago