JPred4: A Protein Secondary Structure Prediction Server
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.2329 days ago
ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This pack...tact: gurtowsk@cshl.edu In short, the correction algorithm takes as input the unitigs fr...ng read data. More background information for the algorithm can be found:http://schatzlab...2323 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by...ream analysis. Long read correction algorithms reduce the error rate of lon...f course, some long read correction algorithms are better than others, and...2323 days ago
Reference-free prediction of rearrangement breakpoint reads
lideSort-BPR ( b reak p oint r eads) is based on a fast algorithm for all-against-all compariso...2261 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using...2220 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to se...imate mapping locations for a read and then a banded Smith-Waterman alignment algorithm to compute the final alignmen...2213 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to fin...2203 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high...owly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be proved preserving...2200 days ago
Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assemb...Genome assembly projects typically run multiple algorithms in an attempt to find the si...ngths and weaknesses. We present our metassembler algorithm that merges multiple assembli...2200 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies,...and thus speed-up genome finishing. The proposed algorithm builds an extension graph whe...maximizes the cumulative contig length. The Mix algorithm, approach and results were pu...2200 days ago