Recovery of complete genomes from metagenomes
...individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads...2322 days ago
mmgenome: Tools for extracting individual genomes from metagneomes
...ing genomes in simple R functions. Thereby making the whole process of binning easy and at the same time rep...h additional data sources and hence should not be seen as "yet another binning method", but rather a package...2096 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...rious steps in metagenomic analysis workflows including data pre-processing, metagenome assembly, taxonomic and functional classification, genome binning, and gene assignment. We aim...1488 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...bly of related metagenomes and the retrieval of individual genomes via binning procedures. Thus, SqueezeMeta...number of metagenomes via merging of individual metagenomes Includes binning and bin checking, for retriev...1358 days ago
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
...equenced so far. Hifiasm can produce primary/alternate assemblies of quality competitive with the best assemblers. It also introduces a new graph binning algorithm and achieves the be...1228 days ago