1103 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Like most of the heuris...2925 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...mparative genomics studies by compensating limitations of existing tools. Synteny Portal is freely available at http://bioinfo.konkuk.ac.kr/synteny_portal. http://bioinfo.konkuk.ac.kr/synteny_portal/2538 days ago
2502 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...NanoSim is written in Python and R. The source files and manual are available at the Genome Sciences Centre website: http://www.bcgsc.ca/platform/bioinfo/software/nanosim https://git...2330 days ago
xmatchview: smith-waterman alignment visualization
...ww.phrap.org) uses an implementation of the Smith-Waterman algorithm for comparing DNA sequences that is sensitive. http://www.bcgsc.ca/platform/bioinfo/software/xmatchview2320 days ago
2298 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2089 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
...mers in sequencing data and predicts the genotype. All this takes less than 1 hour on average low-cost Linux server. http://bioinfo.ut.ee/FastGT/ https://github.com/bioinfo-ut/GenomeTester4/1559 days ago