Results for "Bioinformatics Blog"
Top-level pages
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-c...863 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy wit...bsp;http://www.bestprogramminglanguagefor.me/why-learn-python and http://bioi...2268 days ago
Some useful Bioinformatics links
...rrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Re...lap Assembly of GEnomes | BMC Bioinformatics | Full Text https://bmcbioin...s of genome annotations | BMC Bioinformatics | Full Text https://bmcbioin...2254 days ago
Installing Bio::SCF perl module
...a somewhat recent version of Perl (version 5.8 or above). More about the basic perl module installation steps check this http://bioinformaticsonline.com/blog/view/710/how-to-install-perl-...2231 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename.txt > newfilename_oneline.txt To get average for a column of numbers (here th...
2230 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solution...2215 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFille...clear.com/landingpages/basetools-a-wide-range-of-bioinformatics-solutions/sspacev12/), ATLAS...useful explanation of several tools. https://bioi...2178 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source, flexible, powerful and easy to use....atures and packages of python which are widely used in the big data, NGS, and bioi...2195 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads...2123 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple processors for bioinformatics analysis. One best way is using perl threads and forks. Knowing h...uld be really useful before reading this tutorial. Many times in bioi...2093 days ago
