Results for "Bioinformatics Scripts"
Top-level pages
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improving analysis protocols, testing dat...on and association with annotation information of a reference genome http://bioinfo...2292 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequ...iles chmod 700 file — you can read, write, and execute - good for scripts chmod 644 file — y...2289 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-ce...859 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy wi...sp;http://www.bestprogramminglanguagefor.me/why-learn-python and http://bioinfo...2264 days ago
Some useful Bioinformatics links
...rrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Re...lap Assembly of GEnomes | BMC Bioinformatics | Full Text https://bmcbioin...om/arq5x/lumpy-sv/blob/master/scripts/extractSplitReads_BwaMem jts/nanocor...2250 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename.txt > newfilename_oneline.txt To get average for a column of numbers (here the...
2226 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions...2211 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFille...clear.com/landingpages/basetools-a-wide-range-of-bioinformatics-solutions/sspacev12/), ATLAS...useful explanation of several tools. https://bioinfo...2174 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source, flexible, powerful and easy to use...tures and packages of python which are widely used in the big data, NGS, and bioinfo...2191 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads....2119 days ago
