Results for "Bioinformatics and Computational Biology"
Top-level pages
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically a...oftware http://magnet.systemsbiology.net/software/Dizzy/ DyCo...ction techniques, data models and domain-specific visualizations h...tandardized diagrams (Systems Biology Graphical Notation Process De...2301 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final resu...could be useful for analysis and interpretation of result...o display a sequence assembly and associated metadata http://w...w- or high-depth read pileups and easy visualization of putativ...of a reference genome http://bioinformatic...2297 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequ...st items in current directory and show in long format to see pe...ll items in current directory and show directories with a slash...sh; edit file alias name 'command' — create an alias...2293 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mostly used for pattern scanning and processing. It searches one o...h with the specified patterns and then perform associated actio...itespace character by default and stores it in the $n variables...2293 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their im...eloping new methods for their computational analysis. Following are the list of resource and location for TE discovery and...g/ RepeatRunner http://www.yandell-lab.org/repeat_runner/index.html R...2287 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allow...will highlight the use of Strand NGS features such as PCA, sam...years experience in molecular biology, next-generation sequencing b...a Ph.D in Molecular and Cell Biology from Indian Institute of Scie...2277 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic...is relatively common in prokaryotes and single-celled eukaryotes, but...host nucleus, integrate into the genome, and in more c...tic incompatibility with the host genome and mis...863 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be use...ld productivity tools, games, and desktop apps, so there are pl...-learn-python and http://bioinformaticsonline.com/discussi...d Tour of Python - Jake VanderPlas (PDF) (EPUB, MOBI)...Allen B. Downey, Jeff Elkner and Chris Mey...2268 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Re...LAST DNA Sequences Reversed - Biology Stack Exchange https://biology.stackexchange.com/questions/8...2254 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//...To split bam files into sets with mapped and unmapped reads: samtools vie...all your fastq files using gnu parallel and gzip: pa...| \tr "\t" "\n" > myf2.fq To filter and sor...
2230 days ago
