Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontology (GO) annota...1945 days ago
1944 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment, viz., the recoverabilit...1881 days ago
FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2...s (as identified by SNP2GENE or as provided manually) and annotates genes in biologica...1814 days ago
Patterns: a modeling tool dedicated to biological network modeling
It is designed to work with patterned data. Famous examples of problems related to patterned data are: recovering signals in networks after a stimulation (cascade network reverse engineering), analysing periodic signals.1759 days ago
Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
Miropeats discovers regions of sequence similarity amongst any set of DNA sequences and then presents this similarity...rity searching is a very general tool that forms the basis of many different biologica...1727 days ago
Apollo: a sequence annotation editor
The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an interactive tool to allow biologica...1726 days ago
Kalign: fast multiple sequence alignment program for biological sequences.
Kalign is a fast multiple sequence alignment program for biological sequences. Align sequences and output the alignment in MSF format: kalign -i BB11001.tfa -f msf -o out.msf Al...1661 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological data because of their capabilities in handling randomness and uncert...els (Markov models, Hidden Markov models, and Bayesian networks) for biologica...1600 days ago
Google Colab : Google Colab is a free cloud service and now it supports free GPU!
You can: improve your Python programming language coding skills. develop deep learning applications using popular libraries such as Keras, TensorFlow, Py...1570 days ago