Results for "Biological Networks"
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Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.2917 days ago
- ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.
2907 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without...2892 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release...L, Han Y and He Q (2012). “clusterProfiler: an R package for comparing biologic...
2892 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. p...QuIN, which enables: 1) building and visualizing chromatin interaction networks, 2) annotating networks with user-provided private an...
2882 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R and pyth...
2880 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for in...s, word clouds, Voronoi tree maps and many other charts PCoA, clustering and networks Supports metadata MEGAN par...
2854 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local...dels and alternative splicing events. It can deal with an arbitrary number of biologic...
2832 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain hundreds or...fication is a useful prerequisite for genome assembly and for analysis of the biologic...
2777 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields...te capable of efficiently creating highly customizable static and interactive biologic...
2766 days ago
