Genome assembly tutorial "Genome Assembly for short and long reads"
...perform basic quality checks on the input data How to run a short read assembler on Illumina data How to run a long read assembler on Pacific Biosciences or Oxford Nanopore data How...1958 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
...from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can ei...ired-end, or mate-pair Illumina reads, as well as reads from Pacific Biosciences These simulations include seq...1771 days ago
1574 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
...several benchmarks, improved consensus accuracy and reduced frameshift errors when applied to human and nonhuman assemblies built from Pacific Biosciences HiFi and continuous long read...788 days ago