Results for "Bonobo and Neandertal genome sequencing"
Top-level pages
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignm...rge.net/ REPuter http://www.genomes.de/ RetroMap http://www.bu...ncbi.nlm.nih.gov/CBBresearch/Landsman/TSDfinder/ Tu Lab TE tools htt...2280 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...ion analysis, Splicing events and gene fusion detection. Strand...CVA, UMI support and elastic genome browser used in RNA-Seq workf...data analysis workflow in Strand NGS. Details:Session 1: 28 Feb...ular biology, next-generation sequencing based testing, clinical genom...2271 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of gen...latively common in prokaryotes and single-celled eukaryotes, but...he host nucleus, integrate into the genome, and in more complex organisms it mus...netic incompatibility with the host genome and mismat...857 days ago
Some useful Bioinformatics links
...assembly of the European eel genome from nanopore sequencing reads | Scientific Rep...nstitute.github.io/picard/command-line-overview.html Chromosome-scale scaffolding of de novo genome assemblies based on chromatin...d de novo using only nanopore sequencing data | Nature Methods https:...2248 days ago
Tools to Predict the Impact of Missense Variants !
...is a key challenge in current sequencing studies for exploring complex and Mendelian diseases. A large n...he datasets used for training and for ev...values based on an alignment and a model of neutral evolution&rdq...letions variants in the human genome”2210 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplot...newly installed, 0 to remove and 35 not upgraded.Need to get 4...ly unselected package python-pandas-lib.Preparing to unpack .../py...2018] Reduction...#file name genome size contigs heterozygous siz...Final reduction...#file name genome siz...
2197 days ago
Gap filling or Contigs extensions tools !
...rested in assembling the full genome, just the 100 kb part you're...ping your region of interest, and the set S of reads those contigs...hese clones into a paired-end sequencing vector, and generate paired-e...d (2) again, adding these new sequencing reads to what you had before....2172 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known...f an ancestral gene and expression of the correspondi...suggested in 1963 by Pauling and Zuckerkandl. Some early...nbsp; 4.3- RDP4 for download and installation on Windows in "http://w...2186 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against D...n -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula...id subject (e.g., reference genome) sequence id 3. piden...coring matchesframes Query and subject frames separated by a '/...2145 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are...te.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit Multi-sample...beagle.html Multi-sample LD Candidate SNPs, genotype likelihoods...tware/margarita) MaCH http://genome.sph.umich.edu/wiki/Thunder Multi...2103 days ago
