Results for "Bowtie"
Bookmarks
SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam, primer, tutorial, how-to, introductionRevisions &nb...2869 days ago
- ...you understand how to run Velvet in general, how to accurately estimate the insert size of a paired-end library through the use of Bowtie, the primary parameters of ve...
2701 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley...
2631 days ago
- ...ping. The most used mappers of DNA-seq data are BWA and Bowtie for DNA-Seq data and&nbs...in which options they can take in, how fast and how accurate they are. Bowtie is faster than BWA, but loose...
2556 days ago
Seal: SEquence ALignment evaluation suite
...or incorrectly mapped. Computing run times and measures of accuracy. Seal has interfaces to evaluate the following software packages: Bowtie BWA MAQ mrFAST mrsFAST N...2310 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...or any dataset which can be expressed as a series of genomic positions. It's main features are: Import of mapped data from mapped data (BAM/SAM/bowtie etc) Creation of data groups...2060 days ago
QuasR: Quantification and annotation of short reads in R
...egrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and external software (e.g. bowtie, through the Rbowtie package, and HISAT2, through...992 days ago
