Results for "C"
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Tools to Predict the Impact of Missense Variants !
...mental investigation is a key challenge in current sequencing studies for...well as optimized methods of combining tool scores, such as...riants from the same protein occurring both in the datasets u...e functional impact of amino acid substitutions in proteins,...2223 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section...ormed between two or more molecules (docking). Pockets Ident...titation of their volumes. PocketPicker Grid-based techniqu...e server utilizes protein-structure prediction to provide str...2222 days ago
Protein-Protein Interaction Sites Predictions !
...f Protein–Protein Interactions (PPIs) has a crucial role in biology, medicine and the pharmaceutical industry. PPIs can be...teraction hotspots from sequence KFC server Automated decis...tatic patches on protein surfaces which can be indicative of...2222 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromole...lexible targetAUTODOCK (empirical) FRED Systematic (RBD)Fle...ted, and the determination which method would be more suitabl...2222 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem who...-Dock Suite Global rigid search: FFTShape complementarity an...Escher NG Global rigid searchShape complementarity, hydrog...M Global rigid search: Monte CarloEmpirical scoring function...2222 days ago
- ...python-genshi python-jinja2-doc python-lxml-dbg python-lxml-d...u1 [56,4 kB]Get:2 http://be.archive.ubuntu.com/ubuntu xenial/...4 [83,1 kB]Get:41 http://be.archive.ubuntu.com/ubuntu xenial-...6:amd64 (4.57-1build3) ...Selecting previously unselected pac...
2210 days ago
Creating conda environment for python2.7
...d into the envs directory in your conda directory. Run conda...-name myenv NOTE: Replace myenv with the env...nstalling 1 program at a time can lead to dependency conflict...0.1 | py27_0 1.7 MB ca-certificates-2018.03.07 | 0 124 KB ---...2210 days ago
Learning Python Programming - a bioinformatician perspective !
...t features of python is its rich set of utilities and librari...the current era of big biological data, python and biopython...ig data, NGS, and bioinformatics. I will also walk through a...DNA bases and protein amino acid residues, which we as biolo...2203 days ago
Convert VCF to tab-deilimited table
...Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM...EF -F ALT -GF GT \ -o reference_genomes_GT.table multiple_sample.vcf should also be converted to...2202 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ &&...2202 days ago
