Results for "C"
Top-level pages
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequence reconstruction/resurrection – is a techniq...BEAST is the best way to predict the ancestral structure. but...ion on Windows in "http://web.cbio.uct.ac.za/~darren/rdp.html...2192 days ago
Gap filling or Contigs extensions tools !
...ler: a de novo assembly approach to fill the gap within paired reads" or "Toward almost closed genomes with GapFiller"....it is useful only in some specific situations. Take a loo...art with the initial assembly C0 of the contigs you have iden...2178 days ago
LINKS scaffolder bloomfilter setting !
...oomfilter git:(master) ✗ g++ -c BloomFilter_wrap.cxx -I/home/...➜ bloomfilter git:(master) ✗ cd swig ➜ swig git:(master)...o -O3 ➜ swig git:(master) ✗ cd .. ➜ bloomfilter git:(mast...error (%) allowed on -d distance e.g. -e 0.1 == distance +...2164 days ago
Understanding BLASTn output format 6 !
...t DNA, for example gene sequences against a reference genomeblastn -query genes.f...e.g., reference genome) sequence id 3. pident perce... expect value 12. bitscore bit score Defin...enceevalue Expect valuebitscore Bit scorescore Raw sc...2152 days ago
Interview Puzzles for Bioinformatician !
...erview Puzzles being asked in top tech companies.Here is a list of Top...Interview. 2 Eggs and 100 Floor Classic Puzzle Five pirates an...om Airplane Seats Inverted playing card puzzle Flipping Coins Puz...Burning ropes to measure time Connect 3 houses with 3 wells Measu...2132 days ago
My commonly used commands in Bioinformatics
...YI, I've found it useful to use MUMmer to extract the specific changes that Racon makes,...p -t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_reads.fastq.gz -...ssembly.fasta racon_assembly.fasta show-snps -C -T -r nucmer.delta This re...2123 days ago
List of non-commercial NGS genotype-calling software
...ysis of next-generation sequencing (NGS) data, which are produced extensively by genetics and genomics studies, relies crucially on...ulation of NGS alignments, which includes a computation of ge...Software for SNP and genotype calling, including a method for...2109 days ago
Parallel Processing with Perl !
...make best use of multiple processors for bioinformatics analysis. One best way is us...ing; } This is very slow(since we are using only one proces...rt and next; # do the forkyou code here;$fork->finish; # d...l_children; So basically each processor will be active wit...2093 days ago
- The benchmark module is a great tool to know the time the code takes to run. The output is usually in terms of CPU time. This module provides...code. With the advent of petascale computing and other multic...re sophisticated way: use Benchmark;sub first { my(argument...
2093 days ago
- ...en I went to the download directory at UCSC: http://users.soe.ucsc.edu/~kent/src/ I found...e to download was: blatSrc35.zip. However, you can also...gin read the README file that comes with the source code.One...sult, you must create the directory for the executables to go...
2076 days ago
