BOL: Results for "CDS"

Results for "CDS"

- Rahul Nayak@rahul
Ancient whole genome duplication (WGD) detection tools !
...s 8-ploid with 32 chromosomes (2n = 4x8 = 32) Download the tutorial for CDS and GFF annotation files m...//www.life.illinois.edu/ming/downloads/Spontaneum_genome/Sspon.v20190103.cds.fasta.gzwget http://www.life....
1168 days ago

- Jit@jit.aber
HybPiper
...reads are distributed to separate directories, where they are assembled separately using SPAdes. The main output is a FASTA file of the (in frame) CDS portion of the sample for eac...
2752 days ago
- Jit@jit.aber
HS3D: Homo Sapiens Splice Sites Dataset
...characterization. From the complete GenBank (Primate Sequences Division) Rel.123 (162,557 entries), entries of Human Nuclear DNA including Complete CDS and more than one Exon have b...
1436 days ago
+2 more Bookmarks

- Jit@jit.aber
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bioresources and Sustainable Development (IBSD),...
2584 days ago
- Jitendra Prajapati@jprajapati81
List of Bioinformatics Software Tools for Next Generation Sequencing
...identify mutations’ effect on splicing motifs; uses ensembl database 70 Input: Gene Name, Ensembl transcript ID, Ensembl Gene ID, Consensus CDS, RefSeq Peptide ID, or own se...
2922 days ago

- Abhimanyu Singh@abhimanyu
#Intersect your bed data with coverage $ bedtools genomecov -ibam aln.bam -bga | awk '$4==0' | bedtools intersect -a cds.bed -b - -f 1.0
2011 days ago

- Nishi Singh@nishi
Parse a genbank file using regular expressions
...print "Organism: $2\n"; } elsif(/(gene)(\s*)(\d*)(\.\.)(\d*)/) { print "Gene length: $5\n"; } elsif (/(CDS\s*)(\d*)(\.\.)(\d*)/) { # ex: CDS 357..1541...
2930 days ago
- Jit@jit.aber
Perl script to convert GFF 2 FASTA !
...= 1; # Flush output my $outfile_cds = Bio::SeqIO->new( -format => 'fasta', -file => ">$ARGV[2].cds.fasta" ); my $outfile_pep =...# Output type description ###### # cds - translated sequence (starti...### Second, parse the GFF3 my %CDS; my %CDNA; my $mRNA_name;...
2152 days ago
+3 more Bio-Scripts