Results for "Case"
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Rdatamining.com : R and Data Mining
...mining are available to download for non-commercial personal use, including R Reference card for Data Mining, R and Data Mining: Examples and Case Studies and Time Series Analy...3909 days ago
Public Databases for Bioinformatics !
...ids: os.waitpid(pid, 0) ofp.close() print "FINISHED" For use case 1 we obtained the following E...p://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz. For use case 2 we used the set of narrowPe...1133 days ago
- ...ocol we discuss and outline the process of de novo assembly for small to medium sized genomes. Use our Genome assembly tutorial to learn a specific case of using Galaxy to carry out...
3647 days ago
- ...ll take either a single file or a pair of files as input. If no input file is specified, fqtools will attempt to read data from stdin. In this case, it is advisabe to specify th...
2699 days ago
- ...uality scaffolds from NGS data (reads and contigs). The tool is written in Python 2.7. It also includes a bash script wrapper that calls aligner in case one needs to first map reads...
2694 days ago
- ...igs from a shotgun assembly are typically linked together in a graph structure that can serve to guide finishing and in some case close gaps in-silico. Also, in many cases, sequence composition of con...
2536 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...cestral genomes at the internal nodes of the phylogenetic tree. The phylogenetic tree may be also specified completely or partially, in the latter case MGRA can reconstruct conserve...2470 days ago
- ...nst a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the cand...
2315 days ago
RGFA: powerful and convenient handling of assembly graphs
...tion of RGFA is the editing of a graph, to finish the assembly of a sequence, using information not available to the assembler. We illustrate a use case, in which the assembly of a r...1561 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
...e concept of neighboring gene pairs. REGEN was designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same...2246 days ago
