Results for "Cat"
Bio-Scripts
#USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE: CI_tdist(matrix[,c(x:y)],97.5) - multiple column from a t distribution...2869 days ago
Palindrome Simulation commands !
....fasta out=mutant153CH101.fasta id=97 3316 mutate.sh in=mutant15CH101.fasta out=mutant153CH101.fasta id=97 3317 history > allCommands 3318 cat ch101_read33155_template_pass...1733 days ago
Download the genome from NCBI using bash script/command
...irectory with appending G mkdir "G$filename" cd "G$filename" # take action on each file. $f store current file name wget --input $f #cat $f cd .. done #Referen...2529 days ago
Unzip all the genome file and remove all fasta header except first one
...next} {print $0} ' $f | sed '/^>/{s/ /_/g}' > $f.fa #then sed '1!{/^\>/d;}' $f > $f.fa else echo "this file is not right file" fi #cat $f done2528 days ago
Download the gff files from NCBI using bash script/command
...cd "GFF$filename" # take action on each file. $f store current file name head -n 4 $f > $f.head wget --input $f.head gunzip *.gz #cat $f cd .. done...2520 days ago
Loop over with all files in a directory in bash
...sename "${f%.*}") echo $ff # take action on each file. $f store current file name mkdir $ff $path/SatsumaSynteny -q $ref -t $f -o $ff #cat $f fi done2328 days ago
- # bash cat INFILE.fastq | paste - - - - |cut -f 1, 2| sed 's/@/>/'g | tr -s "/t" "/n" > OUTFILE.fasta #awk cat infile.fq | awk '{if(NR%4==1)...
847 days ago
- ...) Done converting input files.CMD: cat left.fa right.fa > both.fa C...------------- -- (building a k-mer catalog from reads) -- ---------...Monday, July 9, 2018: 10:51:26 CMD: cat /home/urbe/Tools/trinityrnase...ity_out_dir/Trinity.fasta.tmp -relocating /home/urbe/Tools/trinityrn...
2124 days ago
Generate simulated polyploid genome !
#Generate 3% divergence msbar -point 4 -count 16558 toy.fasta > toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozygous3percent.fasta...2050 days ago
Installing pb-assembly on Linux !
...ge metadata ........... Solving package specifications: PackageNotFoundError...metadata ............. Solving package specifications: . Package plan for in...fc_phase.py fc_run.py fc-cat fc_get...2031 days ago
