A simple tutorial for a complex ComplexHeatmap
...ory. install and load required packages require(RColorBrewer) require(ComplexHeatmap) require(circlize) require(digest) require(cluster) If all load successfully,...1127 days ago
3003 days ago
RNA-Seq De novo Assembly Using Trinity
...anscripts for a dominant isoform, but then reports just the unique portions of alternatively spliced transcripts. Chrysalis clusters the Inchworm contigs into clusters and constructs complete de B...2963 days ago
2767 days ago
2663 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop comput...2537 days ago
2460 days ago
orthodotter: Synteny plots (oxford grid)
...uments. To launch the clustering of dots, use extra-option...number of genes in a cluster to be valid. -o <f...e -o Vigne_vs_Banane.png > Vigne_vs_Banane.clusters ---------------------------...2458 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...to install, cost-effective, takes full advantage of multi-core processors and uses a small RAM footprint, Ready to be used on desktop computer, cluster, cloud as well as within dist...2345 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ fo...2233 days ago