Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio d...2602 days ago
DNA testing companies around the globe !
...ntain information in the form of a code, which in turn determines our...l traits and characteristics. This code, the genetic code, is the ord...ions are read out as a type of bar-code by a machine. When the net DN...rillion Biosciences (aka TribeCode) (admixture, deep ancestry)...2481 days ago
Installing Perl environment on Linux
...all 5.18.1 -Dusethreads $ plenv rehash $ plenv global 5.18.1 $ plenv install-cpanm git is a distributed revision control and source code management software which can...2315 days ago
BBTools for bioinformatician !
...unknown primers Code: $ reformat.sh in=reads.fq o...ality histograms Code: $ reformat.sh in=reads.fq q...various formats Code: $ randomreads.sh ref=genome...[*]index the reference Code: $ bbmap.sh ref=reference.fa...2265 days ago
Insert data through ajax into MySql database.
...data through ajax into MySql database.1. Create form.php and copy below code into file. <script type...value="submit" /> </form> 2. Create insert.php and copy below code into file. <?phpprint_r($_...2195 days ago
Installing Bandage on Ubunty !
...;sudo apt-get update Install prerequisite packages: sudo apt-get install build-essential git qtbase5-dev libqt5svg5-dev Download the Bandage code from GitHub: git clone h...2183 days ago
Install ImageMagick from Unix Source
...GNU/Linux ld.sochecking how to hardcode library paths into programs.....GNU/Linux ld.sochecking how to hardcode library paths into programs......h... nochecking for flif_create_decoder in -lflif... nochecking if F...ick++/Blob.h Magick++/lib/Magick++/CoderInfo.h Magick++/lib/Magick++/...2140 days ago
Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does this, the function vcf2fq (lines 469-528) This script has been modified...2110 days ago
Understating pacbio reads name !
...ime of Run Start (yymmdd_hhmmss) Instrument Serial Number SMRT Cell Barcode Set Number (a.k.a. "Look Num...egion (start_stop using polymerase read coordinates) readScore barcodeScore...1984 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two cores (parameter -maxThreads=2) and you would like...1939 days ago