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UCSC Genome Browser and Blat software !
...use. A license is required for commercial download and installation of these binaries, with the exception of items built from the following source code directories, which are freely...2998 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of tran...2964 days ago
- ...ially the SAM specification and the VCF specification. Note that the information on this page is targeted at end-users. For developers, the source code, building instructions and im...
2927 days ago
- SCALCE (/skeɪlz/, a.k.a. boosting Sequence Compression Algorithms using Locally ConsistentEncoding) is a tool for compressing FASTQ files. It...
2941 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_revers...2941 days ago
- First step: Install & load “VennDiagram” package. # install.packages('VennDiagram') library(VennDiagram) Second step: Load data Add filepath if “catdoge.csv” is not in working-directory. d <- read.csv("catdoge.csv")
2931 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Like most of the heuri...2924 days ago
Painless package development for R
...e development a breeze: it works with R’s existing conventions for code structure, adding efficient t...our default layout whenever you’re writing a significant amount of code. Before you get started be s...2923 days ago
- This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big set...
2913 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...The run-time for aligning two bird-size genomes (~1.2 Gb) is around two days on 24 CPUs. You can find the manual here. Download the latest source code from here. Stable versions ca...2913 days ago
