CISA: Contig Integrator for Sequence Assembly
...mblies merged by existing tools. This tool is implemented in Python and requires MUMmer and BLAST+ to be installed on the local machine. The source code of CISA and examples of its u...2697 days ago
E-MEM: Efficient computation of Maximal Exact Matches
...am designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The source code can be downloaded here.&...2697 days ago
2693 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...s not need to be supplied with any knowledge of the organism, as it learns all the properties it needs to on its own. Open Source: Prodigal source code is freely available under the...2683 days ago
2664 days ago
Many-Core Engine (MCE) for Perl example
...g this model. MCE::Flow is similar to MCE::Loop, but allows for multiple code blocks to run in parallel wit..._tasks and MCE::Queue. Like with MCE::Flow, MCE::Stream can run multiple code blocks in parallel with a sli...2650 days ago
TMAP - torrent mapping alignment program General Notes
...P is unsupported. To use a supported version, please see the TMAP version associated with a Torrent Suite release below. Get the latest source code: git clone git://github.co...2589 days ago
2648 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJelly -----Read...2623 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if no sam record was found for a chr...2622 days ago