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The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release2852 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy o..., GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homolo...
2822 days ago
- VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a numb...e likelihood a particular assembly is correct. Home Page: VALET code r...
2795 days ago
- Watch out: only a few files are counted in coverage statistics. Full documentation on Read the Docs. A set of tools for viral metagenomics. virmet is called wit...
2777 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of inte...gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line argum...2768 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop...(e.g. Velvet). Download Minia 2.0.7 Linux 64-bits binaries (Source code) (Legacy codeba...
2718 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memor...tps://github.com/jts/sga SGA dependencies: -google sparse hash library (http://code.g...
2718 days ago
- fqtools is a software suite for fast processing of FASTQ files. Various file manipulations are supported. See below for a full list of the subcommands av...
2718 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX) ggplot2 (from R prompt type install.packages("ggplo...2717 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individua...and requires MUMmer and BLAST+ to be installed on the local machine. The source code o...2711 days ago
