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List of In-silico Binding Site Prediction Tools
...identifier or ligand 3 letter code e.g. NAD. Each binding site has...ts can be accessed by the PDB code or ligand name. KBDOCK: http:/...tes of proteins. Data, source code, and prediction visualizations...squo;s group at The Scripps Research Insitute) or the SiteHound-we...3758 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around...erl one-liners are small and awesome Perl programs that fit in a single line of code a...3642 days ago
Next generation sequencing in R or bioconductor environment
...cosmo The cosmo package allows to search a set of unaligned DNA sequ...Elkan, 1995) in that it allows the search to be supervised by specify...locally, or check versions if your code will be adversely affected by u...ical methods. The following sample code introduces the identification o...3638 days ago
Commercial and public next-gen-seq (NGS) software
...roject. Source for POSIX. SlimSearch - Fledgling commercial product.Synamatix has SXOligoSearch (http://synasite.mgrc.com.m..., CNV-Seq BS-Seq - The source code and data for the "Shotgun Bisul...ith Gordon Robertson. Current code and implementation by Anthony F...3532 days ago
- Since few years miRNA has shown to play important role in therapeutic related research and also known to play vital...lysis.ilmn More: http://www.bioconductor.org/help/search/index.html?q=miRNA+target
3509 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen([...
3563 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad...ions, "export to fasta", and "searching for segment" function....rmation tool for biological research. Use BioGene to learn about g...or local databases. View and search PubMed in table view. Gen...oinformaticians and medical researchers. The application interface...3555 days ago
- Pathway Analysis is usually performed with aim to enrich the genes with their functi...age, SPIA, topGO, Pathview,DOSE,GOStat More: http://www.bioconductor.org/help/search/index.html?q=Enrichment+analy...
3509 days ago
Software packages for next gen sequence analysis
...t The Institute for Genomic Research in Maryland, USA. POSIX OS re...m UCSD (published in Genome Research). Uses a de Bruijn graph appr...CNV-Seq * BS-Seq - The source code and data for the "Shotgun Bisul...ith Gordon Robertson. Current code and implementation by Anthony F...3256 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...assembler Cortex; c++ source code for SNP detection “2kplus2.cpp is a c++ source code for the detection and the class...tation annotation, selected ENCODE annotation, allele frequency in...and data relevant to cancer researchers”; Web app; Supports...2922 days ago
