Results for "Command lines"
Top-level pages
Awk for Bioinformatician and computational biologist
...more files to see if they contain lines that match with the specified p...tion is not given, print all that lines that matches with the given p...rom test.tsv into k until no more lines are to be read: $ awk 'BEGIN...ough for (INDEX in VARIABLE_NAME) command: $ awk '{i[$1]=1}END{for (...2272 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.ou...llery-of-nanoplot/ Tool documentation https://broadinstitute.github.io/picard/comma...2234 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are writ...tall-perl-modules-manually-using-cpan-command-and-other-quick-ways install...ig.hconfig.status: executing depfiles commandsjitendra@jitendra-UNLOCK-INST...SCF/SCF.so"/usr/bin/perl" -MExtUtils::Comma...2210 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename....fasta; do ls $a; grep "^>" -c $a; done To keep only one copy of duplicated lines: awk '!seen[$0]++' To sum a...
2209 days ago
Creating conda environment for python2.7
TIP: By default, environments are installed into the envs directory in your conda directory. Run cond...nv python TIP: You can add much more to the conda create comma...2182 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ &&am...2174 days ago
Parallel Processing with Perl !
...nly one processor) and if we have 500 million lines in the dataset it takes more th...buffering. You can lock the file using flock command. open (my $QUAL, “my...0GB file)You can use unix “split” command for thisfor example:my $num...2072 days ago
- It's been a while since I last installed BLAT and when I went to the download directory...MACHTYPE=x86_64 export MACHTYPE now running the command: echo $MACHTYPE should give...bsp;common.mk and I edited this file with the comma...
2055 days ago
Bioinformatics Training Courses At RASA LSI
RASA conducts comprehensive Life Science skill development training courses in Pune, India for working professionals...m industry leaders how to apply these skills in life science & have a comma...1634 days ago
Industrial Training in Computer Aided Drug Designing (CADD)
Learn More about Computer Aided Drug Designing (CADD)!!! #rasalsi #rasa In our Industrial program you will ge...m industry leaders how to apply these skills in life science & have a comma...1627 days ago
