Comment on "Commercial and public next-gen-seq (NGS) software"
...rpose local alignment tool): http://i.cs.hku.hk/~ckwong3/bwtsw/Zoom: http://www.bioinformaticssolutions.com/products/zoom/index.phpSHRiMP: http://compbio.cs.toronto.edu/shrimp/SHORE (...3626 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial...3626 days ago