3012 days ago
3012 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such r...rent alignment views. The Ensembl comparative genomics infrastructure is ex...other projects including Ensembl Genomes and Gramene and much of the infor...to perform and support vertebrate comparative genomic analyses. We use...2995 days ago
2985 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using compara...2958 days ago
2945 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is...2921 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human visual sys...2937 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangem...several primates was equal/different, having at a glance a map of the entire genomes....2937 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annota...built in 2008 to annotate bacterial and archaeal genomes. It works by offering a stand...RASTtk also accommodates the batch submission of genomes and the ability to customize...2937 days ago