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Useful Links for Bioinformaticians
...uwsg.iu.edu/uhelp/tutorials/toc.html www.unixtools.com/tutorials.html www.networkcom...y Search Tutorials An Overview of Sequence Comparison Algorithms in Molecular Bill...ide to analysing sequence databases Sequence Comparison (Keith Robison) Databa...3143 days ago
Best book Titles for Learning Bionformatics
...in a Nutshell: A Guide to Common Tools and Databases, Scott Markel, Darry...n Discovery in Biomolecular Data: Tools, Techniques, and Application...e Theory and Practice of Sequence Comparison, David Sankoff and Jose...tional Modifications of Proteins: Tools for Functional Proteomics (M...3930 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ement, and alignment software tools The Sequence Alignment/Map format and SAMtools. Li et al, Bioinformatics 25(16):2...011. PubMedCentral Geoseq: a tool for dissecting deep-sequencin...ed with a variety of software tools installed and ready to use....3792 days ago
List of bioinformatics open source projects/software.
Open source software is software that ca...y-foundation-evolves-into-new-toolkit-net-bio.aspx A language-neutral bioinformatics toolkit built using the Microsoft...g-stage.nci.nih.gov/community/tools/caArray ontologic represent...al Dipolar Coupling data SAM Tools Data format (SAM) and accom...3770 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief descript...goryid=3283CoaSim CoaSim is a tool for simulating the coalescent...imulation Program. A software tool for testing and investigating...unt.sourceforge.net/MetaSim A tool to generate collections of sy...3750 days ago
List of In-silico Binding Site Prediction Tools
...g Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.ed...mely fast and powerful search tool that facilitates exploration of the...rch. Currently it is the only tool that offers this kind of integratio...gi-bin/screen2.cgi is a tool for identifying protein cavit...3757 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconduct...GenomicRanges, ShortRead, Rsamtools, etc. Documentation Gen...ages including ShortRead, Rsamtools, rtracklayer, GenomicFeature...ina reads. Documentation Rsamtools Rsamtools provides function...t data in BAM format (via Rsamtools) and associating them with g...3637 days ago