Results for "Compression"
Blogs
Useful Bioinformatics Analysis Tools !
...ebudaj-Grabysz, A., CoMSA: compression of protein multiple sequence... DSRC 2: Industry-oriented compression of FASTQ files, Bioinfor...., FQSqueezer: k-mer-based compression of sequencing data, Scie...., Roguski, L., Disk-based compression of data from genome sequencin...857 days ago
Bookmarks
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...h is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov m...2925 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a FCM, also kno...2321 days ago
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Pages
- ...p; $ scp -c blowfish some_file your_username@remotehost.edu:~It is often suggested that the -C option for compression should also be used to increase speed. The effect of compression, however, will only significa...
3696 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...al SAM format specification file Efficient storage of high throughput sequencing data using reference-based compression. Fritz et al, Genome Res 21(5):734-40, 2011. Full Text Compression of DNA sequence reads in FAST...3773 days ago
- ...ans global - sed also supports regular expressions Compression tar cf file...nbsp; tar czf file.tar.gz files — create a tar with Gzip compression tar xzf fil...
2868 days ago
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Opportunity posts
- ...rsions. 2. Assessing the quality of data and filtering of raw reads. 3. Assembling the raw reads-de novo as well as reference mapping. 4. Compression of aligned reads using Jam to...
3637 days ago
Tags
- SCALCE (/skeɪlz/, a.k.a. boosting Sequence Compression Algorithms using Locally ConsistentEncoding) is a tool for compressing FASTQ files. It is designed specifically for the Illumina-generated FASTQ files, but supports any valid FASTQ with consistent read lengths. ...
Tags: Bioinformatics, FASTQ, Compression, Decompression, NGS
2936 days ago
Quip: Aggressive compression of FASTQ, SAM and BAM files.
This will help us to reduce the amount of drive space we take up and decrease data transfer times Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in the FASTQ and SAM/BAM formats, compressing large datasets to as little as ...Tags: Quip, Aggressive, compression, FASTQ, SAM, BAM, files
706 days ago
Comments
Comment on "How to install Perl modules on Mac OS X in easy steps !!"
Our Perl script for drawing requires the GD module(2.41 or later version). Moreover, the GD module requires the following packages. The gd graphics library The PNG graphics libraryThe zlib compression library2183 days ago
