Results for "Computational Biology works and writings"
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RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation en...lt in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for iden...RAST a more useful research tool and to keep pace with advancement...oice of software for identifying and anno...2924 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to support the cycle of package development....2918 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes tw...genomes, computes alignments, and then keeps only the parts tha...following the conserved order and orientation of features, such...a has parallelization built-in and is designed to run on multi-c...n incomplete list of questions and answ...2908 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2901 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots)...Blaxter Lab, Institute of Evolutionary Biology, University of Edinburgh Goa...enome data for contaminants, symbionts and p...01 to Frontiers in Bioinformatics and Computational Biology...
2877 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor ver...implements methods to analyze and visualize functional profiles...ontributions from Li-Gen Wang and Giovanni Dall'Olio.Maintainer...ICS: A Journal of Integrative Biology, 16(5), pp. 284-287.Insta...
2874 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically a...ns on a genome-wide basis. It works by selecting potential orth...ween database match sequences and the query genome. These score...otential horizontal transfer candidates identified by alternati...
2868 days ago
- CSBB is a command line based bioinformatics suite to analyze biological...emented in Perl, while it also leverages the use of R and python in background for spec...c modules. Major focus of CSBB is to allow users from biology and bioi...
2861 days ago
- Function WiseScaffolder is a stand-alone semi-automatic application for...sp; WiseScaffolder includes 4 subcommands: dumpconfig generates a conf...brary preprocess allows the detection and correction of chimerae, the e...e interative_scaffold_extender, which works wi...
2847 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of Repea...de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and fami...
2811 days ago
